Database:

The portal Northeast Zingiberaceae Resource Centre (NEZRC), has been developed as a part of the project supported by Department of Information Technology (DIT: 0526/T/IITG/014/0809/38), Ministry of Information Technology, Government of India at Applied Biodiversity Laboratory, Indian Institute of Technology Guwahati. This portal specifically provides information on the databases related to genus and species covering the respective information for habitat, feature, economic and medicinal importance, scientific classification, synonyms, vernacular name, image of plants various parts (most of them are the image collected by us, but some have been reused with request made to the owner of the image), and the barcode sequence information generated. The vision behind development of this portal is to provide a common and easily accessible platform for the gingers of NE India. The database would be a very effective tool for researcher who would like to pursue towards utilizing the economic benefits of Zingiberaceae. Since the selected plants are of wide medical importance and have greater economic significance, genomic and molecular authentication are being carried out for these species. This is important for species delineation, planning genetic diversity studies, breeding and sequencing. Techniques like Flow cytometry are used for genome size characterization.

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Resources in Open Domain:

Structure Deposition

KARANJIN: Chemical formula C18H12O4; IUPAC name: 3-methoxy-2-phenylfuro[2,3-h]chromen-4-one; CCDC no: 1421579
GLABRIN: Chemical formula C7H14NO4; IUPAC name: 4,5-dihydroxy-1-methylpiperidine-2-carboxylic acid; CCDC no: 1422898
TAG (48:1): Chemical Formula: C51H96O6; IUPAC name: [(2R)-2-hexadecanoyloxy-3-[(Z)-hexadec-9-enoyl]oxypropyl] hexadecanoate; PubChem CID: 9543986
8(17),12-Labdadiene-15,16-dial; Molecular Formula: C20H30O2; IUPAC name: (2E)-2-[2-(5,5,8a-trimethyl-2-methylidene-3,4,4a,6,7,8-hexahydro-1H-naphthalen-1-yl)ethylidene]butanedial; PubChem CID: 9904510
8,17-Epoxylabd-12-ene-15,16-dial; Molecular Formula: C20H30O3; IUPAC name: (2E)-2-[2-[(1S,4aR,8aR)-5,5,8a-trimethylspiro[3,4,4a,6,7,8-hexahydro-1H-naphthalene-2,2'-oxirane]-1-yl]ethylidene]butanedial

Culture Deposition

The novel bacterium R. pongamiae VKLR-01T isolated from root nodules of Pongamia pinnata deposited to recognized culture collection center (=MTCC 10513T= MSCL 1015T).

GenBank Submissions

NCBI GenBank Accession number OQ376289 Sequence of Thevetia peruviana plastid genome
NCBI GenBank Accession number OQ281590 Sequence of Streblus asper plastid genome
NCBI GenBank Accession number OQ220336 Sequence of Ficus hispida plastid genome
NCBI GenBank Accession number OQ220335 Sequence of Cleome rutidosperma plastid genome
NCBI GenBank Accession number OP414588 Sequence of Cissus quandrangularis plastid genome
NCBI GenBank Accession number MT621164 Sequence of Mesua ferrea plastid genome GenBank
NCBI GenBank Accession number MW752444 Sequence of Pongamia pinnata plastid genome GenBank
NCBI GenBank Accession number AF380357- Sequence of Porteresia coarctata eIF1 gene GenBank
NCBI GenBank Accession number KF651985 and KF651986- Sequence of Pongamia pinnata FAD2 gene GenBank
NCBI GenBank Accession number KF192317 - Sequence of Pongamia pinnata SAD gene GenBank
NCBI GenBank Accession number GQ444136 - Sequence of R. pongamiae VKLR-01T 16S rRNA gene GenBank
NCBI GenBank Accession number HM626171 - Sequence of R. pongamiae VKLR-01T 16S recA gene GenBank
NCBI GenBank Accession number HM626172 - Sequence of R. pongamiae VKLR-01T 16S atpD gene GenBank

NCBI GenBank Submission of Repeated Elements for the Studied Bio-fuel plants:

S. No	Species Name	Ty1-copia	Ty3-gypsy	Lines
1	Pongamia pinnata	KP202834.1 - KP202847.1, MH397570 - MH397584	MH397537 - MH397566	MH397508 - MH397533
2	Mesua ferrea	KU507530.1	MH397567	MH397536
3	Ricinus communis	MH397585	MH397569	MH397534
4	Jatropha curcus	MH397586	MH397568	MH397535

 

NCBI GenBank Submission for the Studied Zingiberecease species and their outgroup taxa:

S. No	Species Name	accD	matK	rbcL	rpoB	rpoC1	atpF-atpH	psbA-trnH	psbK-psbI
1	Alpinia roxburghii R. Sweet	KC597943.1	KC597951.1	KC598059.1	KC597959.1	KC597967.1	KC597844.1	KC597904.1	KC597896.1
2	Alpinia malaccensis (Burm.f.) Roscoe	KC597944.1	KC597952.1	KC598060.1	KC597960.1	KC597968.1	KC597845.1	KC597905.1	KC597897.1
3	Alpinia nigra (Gaertn.) B.L.Burtt	KC597945.1	KC597953.1	KC598061.1	KC597961.1	KC597969.1	KC597846.1	KC597906.1	KC597898.1
4	Alpinia sp.2	KC597947.1	KC597955.1	KC598063.1	KC597963.1	KC597971.1	KC597848.1	KC597908.1	KC597900.1
5	Alpinia sp. 5	KC597950.1	KC597958.1	KC598066.1	KC597966.1	KC597974.1	KC597851.1	KC597911.1	KC597903.1
6	Amomum subulatum	KC597894.1	KC597975.1	KC597977.1	KC597979.1	KC597981.1	KC597852.1	KC598055.1	KC598057.1
7	Amomum sp	KC597895.1	KC597976.1	KC597978.1	KC597980.1	KC597982.1	KC597853.1	KC598056.1	KC598058.1
8	Elleteria cardamomum	KC598073.1	KC597983.1	KC597985.1	KC597987.1	KC597990.1	KC597854.1	KC597892.1	KC597891.1
9	Elleteria sp	KC598074.1	KC597984.1	KC597986.1	KC597988.1	KC597989.1	KC597855.1	KC597893.1	KC597890.1
10	Curcuma amada Roxb.	JN180515.1	JN180531.1	JN180547.1	JN180555.1	JN180563.1	JN180523.1	KC597935.1	JN180539.1
11	Curcuma angustifolia Roxb.	JN180516.1	JN180532.1	JN180548.1	JN180556.1	JN180564.1	JN180524.1	KC597936.1	JN180540.1
12	Curcuma aromatica Salisb.	JN180517.1	JN180533.1	JN180549.1	JN180557.1	JN180565.1	JN180525.1	KC597937.1	JN180541.1
13	Curcuma caesia  Roxb.	JN180518.1	JN180534.1	JN180550.1	JN180558.1	JN180566.1	JN180526.1	KC597938.1	JN180542.1
14	Curcuma leucorrhiza Roxb.	JN180519.1	JN180535.1	JN180551.1	JN180559.1	JN180567.1	JN180527.1	KC597939.1	JN180543.1
15	Curcuma sp	JN180521.1	JN180537.1	JN180553.1	JN180561.1	JN180569.1	JN180529.1	KC597941.1	JN180545.1
16	Curcuma zanthorrhiza Roxb.	JN180522.1	JN180538.1	JN180554.1	JN180562.1	JN180570.1	JN180530.1	KC597942.1	JN180546.1
17	Hedychium coronarium J. Koenig	JN180573.1	JN180505.1	JN180606.1	JN180493.1	KC597922.1	JN180585.1	KC597925.1	JN180594.1
18	Hedychium deikanium A.S.Rao & D.M.Verma	JN180574.1	JN180506.1	JN180607.1	JN180494.1	JN180618.1	JN180586.1	KC597926.1	JN180595.1
19	Hedychium flavum Roxb.	JN180577.1	JN180509.1	JN180610.1	JN180497.1	JN180621.1	KC597920.1	KC597927.1	JN180598.1
20	Hedychium stenopetalum Lodd.	JN180579.1	JN180511.1	JN180612.1	JN180499.1	JN180623.1	KC597921.1	KC597928.1	JN180600.1
21	Hedychium spicatum Sm. in A. Rees	JN180582.1	JN180514.1	JN180615.1	JN180502.1	JN180626.1	JN180591.1	KC597929.1	JN180603.1
22	Hedychium chrysoleucum Hooker	JN180581.1	JN180513.1	JN180614.1	JN180501.1	JN180625.1	JN180590.1	KC597932.1	JN180602.1
23	Hedychium gardnerianum Sheppard ex Ker Gawl.	JN180578.1	JN180510.1	JN180611.1	JN180498.1	JN180622.1	---------------	KC597931.1	JN180599.1
24	Hedychium forrestii Diels.	JN180576.1	JN180508.1	JN180609.1	JN180496.1	JN180620.1	JN180588.1	KC597923.1	JN180597.1
25	Hedychium flavescens Carey ex Roscoe	JN180575.1	JN180507.1	JN180608.1	JN180495.1	JN180619.1	JN180587.1	KC597924.1	JN180596.1
26	Hedychium coccinium Buch.-Ham. ex Sm. in A. Rees	JN180571.1 JN180572.1	JN180503.1 JN180504.1	JN180604.1 JN180605.1	JN180491.1 JN180492.1	JN180616.1 JN180617.1	JN180583.1 JN180584.1	KC597934.1 KC597933.1	JN180592.1 JN180593.1
27	Kaempferia galanga L.	KC597991.1	KC597912.1	KC597999.1	KC598007.1	KC598015.1	KC598047.1	KC597882.1	KC597874.1
28	Kaempferia angustifolia Roscoe	KC597992.1	KC597913.1	KC598000.1	KC598008.1	KC598016.1	KC598048.1	KC597883.1	KC597875.1
29	Kaempferia elegans Wall. Ex Bak.	KC597993.1	KC597914.1	KC598001.1	KC598009.1	KC598017.1	KC598049.1	KC597884.1	KC597876.1
30	Kaempferia rotunda L.	KC597994.1	KC597915.1	KC598002.1	KC598010.1	KC598018.1	KC598050.1	KC597885.1	KC597877.1
31	Zingiber montanum (J.Konig) Link ex A.Dietr.	KC598067.1	KC598023.1	KC598029.1	KC598035.1	KC598041.1	KC597856.1	KC597868.1	KC597862.1
32	Zingiber moran Roscoe	KC598068.1	KC598024.1	KC598030.1	KC598036.1	KC598042.1	KC597857.1	KC597869.1	KC597863.1
33	Zingiber officinale Roscoe	KC598069.1	KC598025.1	KC598031.1	KC598037.1	KC598043.1	KC597858.1	KC597870.1	KC597864.1
34	Zingiber zerumbet (L.) Roscoe ex Sm	KC598070.1	KC598026.1	KC598032.1	KC598038.1	KC598044.1	KC597859.1	KC597871.1	KC597865.1
35	Zingiber sp1	KC598071.1	KC598027.1	KC598033.1	KC598039.1	KC598045.1	KC597860.1	KC597872.1	KC597866.1
36	Zingiber sp2	KC598072.1	KC598028.1	KC598034.1	KC598040.1	KC598046.1	KC597861.1	KC597873.1	KC597867.1
OUTGROUP TAXA FROM MARANTACEAE FAMILY:
37	Calathea bachemiana E. Morren1	KC597996.1	KC597917.1	KC598004.1	KC598012.1	KC598020.1	KC598052.1	KC597887.1	KC597879.1
38	Calathea bachemiana E. Morren2	KC597995.1	KC597916.1	KC598003.1	KC598011.1	KC598019.1	KC598051.1	KC597886.1	KC597878.1
39	Maranta leuconeura  E. Morren1	KC597997.1	KC597918.1	KC598005.1	KC598013.1	KC598021.1	KC598053.1	KC597888.1	KC597880.1
40	Maranta leuconeura E. Morren	KC597998.1	KC597919.1	KC598006.1	KC598014.1	KC598022.1	KC598054.1	KC597889.1	KC597881.1