Department of Bioscience & Bioengineering








Journals    |    Invited talks
    * Corresponds to Corresponding Author

  1. Tanumoy Sarkar, Vignesh S. R, Pradeep Kumar Sundaravadivelu, Rajkumar Purushottambhai Thummar, Priyadarshi Satpati*, Sunanda Chatterjee*. "De novo Design of Tryptophan containing Broad-Spectrum Cationic Antimicrobial Octapeptides". ChemMedChem (2024), DOI: 10.1002/cmdc.202400566

  2. Tanumoy Sarkar, Vignesh S. R, Tanya Sehgal, K.R. Ronima, Rajkumar P. Thummer, Priyadarshi Satpati*, Sunanda Chatterjee*. "Development of Protease Resistant and Non-Cytotoxic Jelleine Analogs with enhanced Broad Spectrum Antimicrobial Efficacy". Biochimica et Biophysica Acta (BBA)-Biomembranes (2024), DOI: 10.1016/j.bbamem.2024.184336

  3. Shreya Bhattacharya, Priyadarshi Satpati*. "Why does the E1219V mutation expand T-rich PAM recognition in Cas9 from Streptococcus pyogenes?". Journal of Chemical Information and Modeling (2024), DOI: 10.1021/acs.jcim.3c01515

  4. Manorama Ghosal, Shreya Bhattacharya, Sankar Bhattacharyya, Tatini Rakshit*, Priyadarshi Satpati*, Dulal Senapati*. "E-Protein Protonation Titration-induced Single Particle Chemical Force Spectroscopy for Microscopic Understanding and pI Estimation of Infectious DENV". J. Phys. Chem. B. (2024), DOI: 10.1021/acs.jpcb.4c00057

  5. Tanumoy Sarkar, Suvankar Ghosh, Pradeep Sundaravadivelu, Gopal Pandit, Swapna Debnath, Rajkumar Thummer, Priyadarshi Satpati*, Sunanda Chatterjee*. "Mechanism of Protease Resistance of D-Amino Acid Residue Containing Cationic Antimicrobial Hepta-Peptides" ACS Infectious Disease (2024), DOI: 10.1021/acsinfecdis.3c00491

  6. Suvankar Ghosh, Sunanda Chatterjee*, Priyadarshi Satpati*. "Effect of Spacer Length Modification of the Cationic Side-chain on the Energetics of Antimicrobial Peptide Binding to Membrane-mimetic-bilayers". Journal of Chemical Information and Modeling (2023), DOI: 10.1021/acs.jcim.3c01080

  7. Swapna Debnath, S.R. Vignesh, Dinesh Kumar, Babulal Das, Prema Vasudeva*, Priyadarshi Satpati*, Sunanda Chatterjee*. "Ambidexterity and Left-handedness Induced by Geminally Di-substituted Gamma Amino Acid Residues in Chiral 310 Helices". ACS Omega (2023), DOI: 10.1021/acsomega.3c05124

  8. Suvankar Ghosh, Tanumoy Sarkar, Sunanda Chatterjee*, Priyadarshi Satpati*. "Bridging Thermodynamics, Antimicrobial Activity, and pH Sensitivity of Cationic Membranolytic Hepta-Peptides – A Computational and Experimental Study". Journal of Chemical Information and Modeling (2023), DOI: 10.1021/acs.jcim.2c01419

  9. Swapna Debnath, S.R. Vignesh, Priyadarshi Satpati*, Sunanda Chatterjee*. "Position of Geminal Substitution of γ Amino Acid Residues Modulates Their Ability to Form Isolated Non-Helical C12 β-turn Mimics". ChemistrySelect (2023), DOI: 10.1002/slct.202204255

  10. Shreya Bhattacharya, Priyadarshi Satpati*. "Insights into the mechanism of CRISPR/Cas9 based genome editing from Molecular Dynamics Simulations". ACS Omega (2022), DOI: 10.1021/acsomega.2c05583

  11. Abhishek Kumar, Priyadarshi Satpati*. "Structure-Based Thermodynamics of Ion Selectivity (Mg2+ versus Ca2+ and K+ versus Na+) in the active site of the eukaryotic lariat group II intron from algae Pylaiella littoralis". Phys. Chem. Chem. Phys (2022) DOI: 10.1039/D2CP03472G

  12. Suvankar Ghosh, Sunanda Chatterjee*, Priyadarshi Satpati*. "Effect of Monovalent Salt on the Energetics of Antimicrobial-Peptide: Micelle Dissociation". Phys. Chem. Chem. Phys (2022) DOI: 10.1039/D2CP02735F

  13. Suvankar Ghosh, Sunanda Chatterjee*, Priyadarshi Satpati*. "Effect of Leu/Val Mutation on the Energetics of Anti-microbial Peptide:Micelle Binding". J. Phys. Chem. B. (2022) DOI: 10.1021/acs.jpcb.2c01293

  14. Swapna Debnath, Suvankar Ghosh, Dinesh Kumar, Prema G Vasudev*, Priyadarshi Satpati* and Sunanda Chatterjee*. "Effect of differential backbone di-substitution of gamma amino acid residues on the conformation and assembly of their Fmoc derivatives in solid and solution states", Chemistry - An Asian Journal. (2022) DOI: 10.1002/asia.202200356

  15. Gopal Pandit, Tanumoy Sarkar, Vignesh S.R., Swapna Debnath, Priyadarshi Satpati* and Sunanda Chatterjee*. "Delineating the Mechanism of Action of a Protease Resistant and Salt Tolerant Synthetic Antimicrobial Peptide against Pseudomonas aeruginosa". ACS Omega 7 (2022): 15951−15968 DOI: 10.1021/acsomega.2c01089

  16. Suvankar Ghosh, Swapna Debnath, Gopal Pandit, Sunanda Chatterjee* and Priyadarshi Satpati*. "Effect of Monovalent Salt Concentration and Peptide Secondary Structure in Peptide-Micelle Binding." RSC Adv., 11 (2021): 36836-36849. DOI: 10.1039/D1RA06772A

  17. Abhishek Kumar, and Priyadarshi Satpati*. " Divalent Metal-ion Selectivity of CRISPR-Cas System Associated Cas1 Protein- Insights from Classical Molecular Dynamics Simulations and Electronic Structure Calculations." J. Phys. Chem. B. (2021). DOI: 10.1021/acs.jpcb.1c07744

  18. Swapna Debnath, Suvankar Ghosh, Gopal Pandit, Priyadarshi Satpati*, and Sunanda Chatterjee*. "Effect of Differential Geminal Substitution of γ Amino Acid Residues at the (i+ 2) Position of αγ Turn Segments on the Conformation of Template β-Hairpin Peptides." The Journal of Organic Chemistry (2021). DOI: 10.1021/acs.joc.1c00351

  19. Suvankar Ghosh, Debojit Bhattacherjee, Priyadarshi Satpati*, and Krishna Pada Bhabak*."Venetoclax: A Promising Repurposed Drug Against SARS-CoV-2 Main Protease." Journal of Biomolecular Structure & Dynamics. (2021) DOI: 10.1080/07391102.2021.1967786

  20. Riddhi Banerjee, Abhishek Kumar, Priyadarshi Satpati, and Shirisha Nagotu*. "Mimicking human Drp1 disease-causing mutations in yeast Dnm1 reveals altered mitochondrial dynamics." Mitochondrion (2021): S1567-7249. DOI: 10.1016/j.mito.2021.06.009

  21. Suvankar Ghosh, T. Atchuta Ramarao, Pralok K. Samanta, Anjali Jha*, Priyadarshi Satpati*, and Anik Sen*. "Triazole Based Isatin Derivatives as Potential Inhibitor of Key Cancer promoting Kinases-Insight from Electronic Structure, Docking and Molecular Dynamics Simulations." Journal of Molecular Graphics and Modelling (2021): 107944. DOI: 10.1016/j.jmgm.2021.107944

  22. Kumar Gaurav, Tiasha Adhikary, and Priyadarshi Satpati*. "dUMP/F-dUMP Binding to Thymidylate Synthase: Human Versus Mycobacterium tuberculosis." ACS omega 5, no. 28 (2020): 17182-17192. DOI: 10.1021/acsomega.0c01224

  23. Nasim Akhtar, Nirmalya Pradhan, Ganesh Kumar Barik, Soumya Chatterjee, Suvankar Ghosh, Abhishek Saha, Priyadarshi Satpati, Arindam Bhattacharyya, Manas Kumar Santra, and Debasis Manna*. "Quinine-Based Semisynthetic Ion Transporters with Potential Antiproliferative Activities." ACS Applied Materials & Interfaces 12, no. 23 (2020): 25521-25533. DOI: 10.1021/acsami.0c01259

  24. Abhishek Kumar, and Priyadarshi Satpati*. "Mg2+ vs Ca2+ bound active site of group II intron–A MD study." Journal of Molecular Graphics and Modelling 97 (2020): 107546. DOI: 10.1016/j.jmgm.2020.107546

  25. Gopal Pandit, Karishma Biswas, Suvankar Ghosh, Swapna Debnath, Anil P. Bidkar, Priyadarshi Satpati*, Anirban Bhunia*, and Sunanda Chatterjee*. "Rationally designed antimicrobial peptides: Insight into the mechanism of eleven residue peptides against microbial infections." Biochimica et Biophysica Acta (BBA)-Biomembranes 1862, no. 4 (2020): 183177. DOI: 10.1016/j.bbamem.2020.183177

  26. Saransh Shukla, Amit Kumar, Debasish Das, and Priyadarshi Satpati*. "Principle of DNA recognition by sporulation-regulatory protein (Spo0A) in Bacillus subtilis." Journal of Biomolecular Structure and Dynamics 38, no. 17 (2020): 5186-5194. DOI: 10.1080/07391102.2019.1696890

  27. Amit Kumar, and Priyadarshi Satpati*. "Why double-stranded RNA with 5′-monophosphate is a poor binder to retinoic acid-inducible gene-I with respect to 5′-hydroxyl analogue?." Journal of Biomolecular Structure and Dynamics 38, no. 13 (2020): 4048-4055. DOI: 10.1080/07391102.2019.1671225

  28. Amit Kumar, Johan Åqvist*, and Priyadarshi Satpati*. "Principles of tRNAAla Selection by Alanyl–tRNA Synthetase Based on the Critical G3· U70 Base Pair." ACS omega 4, no. 13 (2019): 15539-15548. DOI: 10.1021/acsomega.9b01827

  29. Abhishek Kumar, Debaditya Mukherjee, and Priyadarshi Satpati*. "Mutations in Parkinson’s Disease Associated Protein DJ-1 Alter the Energetics of DJ-1 Dimerization." Journal of chemical information and modeling 59, no. 4 (2019): 1497-1507. DOI: 10.1021/acs.jcim.8b00687

  30. Karabi Roy, Suvankar Ghosh, Monikha Chetia, Priyadarshi Satpati*, and Sunanda Chatterjee*. "Dicyclohexylurea derivatives of amino acids as dye absorbent organogels and anion sensors." Organic & biomolecular chemistry 17, no. 11 (2019): 3026-3039. DOI: 10.1039/C9OB00014C

  31. Christoffer Lind, Mauricio Esguerra, Willem Jespers, Priyadarshi Satpati, Hugo Gutierrez-de-Terán, and Johan Åqvist*. "Free energy calculations of RNA interactions." Methods 162 (2019): 85-95. DOI: 10.1016/j.ymeth.2019.02.014

  32. Gopal Pandit, Humaira Ilyas, Suvankar Ghosh, Anil P. Bidkar, Sk Abdul Mohid, Anirban Bhunia*, Priyadarshi Satpati*, and Sunanda Chatterjee*. "Insights into the Mechanism of Antimicrobial Activity of Seven-Residue Peptides." Journal of medicinal chemistry 61, no. 17 (2018): 7614-7629. DOI: 10.1021/acs.jmedchem.8b00353

  33. Abhishek Kumar, and Priyadarshi Satpati*. "Principle of K+/Na+ selectivity in the active site of group II intron at various stages of self-splicing pathway." Journal of Molecular Graphics and Modelling 84 (2018): 1-9. DOI: 10.1016/j.jmgm.2018.05.003

  34. Amit Kumar, and Priyadarshi Satpati*. "Energetics of preferential binding of retinoic acid-inducible gene-I to double-stranded viral RNAs with 5′ Tri-/Diphosphate over 5′ Monophosphate." ACS omega 3, no. 4 (2018): 3786-3795. DOI: 10.1021/acsomega.7b02019

  35. Buddahdeb Mondal, Keshab Mondal, Priyadarshi Satpati*, and Subhas Chandra Pan*. "Organocatalytic Asymmetric Dimerization of γ-Hydroxyenones to Acetals and Theoretical Investigations into the Diastereoselection." European Journal of Organic Chemistry 2017, no. 47 (2017): 7101-7106. DOI: 10.1002/ejoc.201701439

  36. Amit Kumar, Debadrita Basu, and Priyadarshi Satpati*. "Structure-Based Energetics of Stop Codon Recognition by Eukaryotic Release Factor." Journal of chemical information and modeling 57, no. 9 (2017): 2321-2328. DOI: 10.1021/acs.jcim.7b00340

    37. Before joining IIT Guwahati

  37. T. Simonson, A. Aleksandrov, P. Satpati, Electrostatic free energies in translational GTPases: classic allostery and the rest. Biochim Biophys Acta, 1850, 1006-1016 (2015)

  38. P. Satpati, J. Åqvist, Why base tautomerization does not cause errors in mRNA decoding on the ribosome. Nucleic Acids Research, 42, 12876-12884 (2014)

  39. P. Satpati, P. Bauer, J. Åqvist, Energetic tuning by tRNA modifications ensures correct decoding of isoleucine and methionine on the ribosome. Chem. Eur. J, 20, 10271-10275 (2014)

  40. P. Satpati, J. Sund, J. Åqvist, Structure-Based Energetics of mRNA Decoding on the Ribosome, Biochemistry, 53, 1714-1722 (2014)

  41. T. Simonson & P. Satpati, Simulating GTP:Mg and GDP:Mg with a simple force field: a structural and thermodynamic analysis, J. Comput. Chem, 34, 836-846 (2013)

  42. T. Simonson & P. Satpati, Nucleotide recognition by the initiation factor aIF5B: free energy simulations of a neo-classical GTPase, Proteins, 80, 2742-2757 (2012)

  43. P. Satpati & T. Simonson, Conformational selection through electrostatics: free energy simulations of GTP and GDP binding to archaeal Initiation Factor 2, Proteins, 80, 1264-1282 (2012)

  44. P. Satpati & T. Simonson, Conformational selection by the aIF2 GTPase: a molecular dynamics study of functional pathways, Biochemistry, 51, 353-361 (2012)

  45. P Satpati, C. Clavaguera, G. Ohanessian, T. Simonson, Free Energy Simulations of a GTPase: GTP and GDP Binding to Archaeal Initiation Factor 2, J. Phys. Chem. B. 115, 6749-6763 (2011)

  46. P. Satpati*, Stable complex C2H4Al4Li3- and its similarity with bicyclo[2.2.0] hex-2-ene: A DFT study, Int. J. Quant. Chem, 111, 4241-4246 (2011)

  47. P.Satpati*, Possibility of proton passage through all metal aromatic Al42- ring in HAl4-, Int. J. Quant. Chem , 111, 3816-3820 (2011)

  48. P. Satpati* and K. L. Sebastian, Stabilization of an all-metal antiaromatic molecule (Al4Li4) using BH and C as caps, Inorganic Chemistry. 47, 2098-2102 (2008)

  49. P. Satpati*, Structure and bonding of MCB5H7 and its sandwiched dimer CB5H6M-MCB5H6 (M = Si, Ge, Sn): Isomer stability and preference for slip distorted structure, Journal of Organometallic Chemistry, 693, 1159-1165 (2008)

  50. P. Satpati* and K. L. Sebastian, Tunneling of three borons in a B12 cluster, Journal Of Molecular Structure : THEOCHEM 823, 74-77 (2007)

  51. P.Satpati*, Dcab2- Substituted Manganese Vinylidene complexes as better electron reservoirs: A DFT study, Organometallics. 26, 4771-4775 (2007)
© 2017 Dr. Satpati's Lab
Designed by Suvankar