Journal Publications
1. John Thomas, "Boulders that Speak No More", Seminar, vol.740, pp.35-44, ISBN.0971-6742 [2021], https://www.india-seminar.com/2021/740/740_john_thomas.htm
2. John Thomas, "The Life and Times of The Slayer Slain: Writing a Missionary Novel in 19th Century Travancore", Indian History, Archive India Institute, vol.1, pp.63-88, ISBN.2348-2850 [2014]
3. John Thomas, "Sending Out the Spears: Zeliangrong Movement, Naga Club and a Nation in the Making", Indian Economic and Social History Review, Sage, vol.49, Issue no.3, pp.399-437, ISBN.194646 [2012]
4. John Thomas, "Missionaries, Colonialism and the Writing of History Among the Nagas", The Journal of Theologies and Cultures in Asia, Programme for Theologies and Cultures in Asia, vol.8, pp.95-119, ISBN.1682-6086 [2009]
Conference Proceedings
1. John Thomas, "Fixity and Fluidity: History, Politics and Culture of North East India", State, Religion and Mystification of Naga Movement, Centre for North East India Studies, JNU, pp.31-41 [2016]
Book Chapter
1. John Thomas, "War, Nationalism and Conversions" , Routledge Readings on Colonial to Contemporary Northeastern India: Customary Practices, Gender and Livelihoods , Routledge , [2023]
2. John Thomas, "Religion and Nationality Struggles in the North-East" , Pathways to Harmony: The Role of Religion in Conflicts and Peace , North Eastern Social Research Centre , pp.26 [2022]
3. John Thomas, "From Sacred Rocks to Temples: Recasting Religion as Identity in North-East India" , Landscape, Culture and Belonging: Writing the History of Northeast India (eds. Neeladri Bhattacharya and Joy Pachuau) , Cambridge University Press ISBN.9.78E+12, pp.314-332, [2019]
4. John Thomas, "Gender and Politics in India: Experiences from the North-East (Ed. Kaini Lokho)" , On Evangelical Christianity and the Making of Gender Relations among the Nagas , Akansha Publishing House ISBN.9.79E+12, [2017]
Books
1. John Thomas, "Evangelising the Nation: Religion and the Formation of Naga Political Identity", Routledge, ISBN.978-1-138-63992-8 [2016]