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# | Aptamer Name | Aptamer Target (General) | Aptamer Target (Specific) | Length | Affinity | Buffer | GC Content | Sequence | Reference |
---|---|---|---|---|---|---|---|---|---|
111 | EGFR (CL4) | Protein | EGFR - Extracellular Domain | 39 | 10 nM | Buffer used for Binding Assays: PBS with 0.01% BSA. Incubation Time: 15 minutes. | 51.28% | 5'-GCCUUAGUAACGUGCUUUGAUGUCGAUUCGACAGGAGGC-3' | CL Esposito et al. A neutralizing RNA aptamer against EGFR causes selective apoptotic cell death. PLoS One 6(2011):e24071. |
112 | Osteopontin (OPN-R3) | Protein | Human Osteopontin | 40 | 18 nM | Binding Buffer: PBS (137 nM NaCl, 27 nM KCl, 100 nM Na2HPO4, 2 nM K2HPO4, pH 7.4) | 45.00% | 5'-CGGCCACAGAAUGAAAAACCUCAUCGAUGUUGCAUAGUUG-3' | Z Mi et al. RNA aptamer blockade of osteopontin inhibits growth and metastasis of MDA-MB231 breast cancer cells. Molecular Therapy 17(2009): 153-161 |
113 | Receptor Tyrosine Kinase (RET) Mutant (D4) | Protein | Receptor Tyrosine Kinase (RET) Mutant | 50 | 35 nM | Selection buffer: RPMI 1640 | 54.00% | 5'-GCGCGGGAAUAGUAUGGAAGGAUACGUAUACCGUGCAAUCCAGGGCAACG-3' | Cerchia, Laura, et al. "Neutralizing Aptamers from Whole-Cell SELEX Inhibit the RET Receptor Tyrosine Kinase." PLoS Biology, 3 (2004): e123 |
114 | Neurotrophin receptor, TrkB (C4-3) | Protein | Neurotrophin receptor, TrkB | 51 | 2.1 nM | DPBS Running Buffer: 0.901 mM CaCl2, 0.493 mM MgCl2, 2.67 mM KCl, 1.47 mM KH2PO4 , 137.93 mM NaCl and 8.06 mM Na2HPO4. | 64.71% | 5'-GGGAGGACGAUGCGGUCGUAUUAUCCGCUGCACGCCAGACGACUCGCCCGA-3' | Huang, Y. (2012). RNA aptamer-based functional ligands of the neurotrophin receptor, TrkB. J. Pharmacol. Exp. Ther. 82(2012):623-635. |
115 | PSMA Aptamer (A10-3) | Protein | PSMA | 56 | 20.5 nM | HEPES buffered saline (pH 7.4), 1 mM MgCl2, 1 mM CaCl2, 0.01% I-block (Tropix Inc. Bedford, MA), and 0.05% Tween 20. Incubated at 37 °C for 30 minutes. Washed using the above buffer at 37 °C. | 55.36% | 5'-GGGAGGACGAUGCGGAUCAGCCAUGUUUACGUCACUCCUUGUCAAUCCUCAUCGGC-3' | Lupold, Shawn, et al. "Identification and Characterization of Nuclease-stabilized RNA Molecules That Bind Human Prostate Cancer Cells via the Prostate-specific Membrane Antigen." American Association for Cancer Research Journal 62, (2002): 4029-4033 |
116 | P-Selectin (PF377) | Protein | P-Selectin | 57 | N/A nM | Washed with PBS and 0.9 mM CaCl2, 0.5 mM MgCl2, 2.67 mM KCl, 1.47 mM KH2PO4, 135 mM NaCl, and 8 mM Na2. | 57.89% | 5'-ACGCUCAACGAGCCAGGAACAUCGACGUCAGCAAACGCGAGCGCAACCAGUAACACC-3' | Burnette et al. "RNA Aptamer Therapy for Vaso-Occlusion in Sickle Cell Disease." Nucleic Acids Therapeutics, 21(2011): 275-283. Jenison et al. "Oligonucleotide Inhibitors of P-Selectin Dependent Neutrophil-Platelet Adhesion." Antisense & Nucleic Acid Development, 8(1998): 265-279. |
117 | Interferon-? (2'F-1) | Protein | Interferon-y/IFN-y/IFNG | 59 | 4.4 nM | Binding Mixture: PBS (138 mM NaC1, 2.7 mM KCl, 8.1 mM Na2HPO4, and 1.1 mM KH2PO4, pH 7.4) containing 1 mM Mg2+ ions and 0.01% human serum albumin. | 57.63% | 5'-GGGAGGACGAUGCGGACACCGUUAAUCUGAGGCCCUGUCCUAUUCCUUCACGCCUCAGA-3' | Kubik, Mark F., et al. "Isolation and Characterization of 2ƒ??-Fluoro-, 2ƒ??-Amino-, and 2ƒ??-Fluoro-/Amino-Modified RNA Ligands to Human IFN-7 That Inhibit Receptor Binding." Journal of Immunology, 159 (1997): 259-267 |
118 | Clone 2 | Protein | Protein E (PE) | 66 | 1.2 nM | 165 ug (~5 nmol) purified truncated His-tagged PE immobilized on Ni–NTA agarose (Qiagen) in 1.6 mL PBSM (PBS with 1 mM MgCl2) | 68.18% | 5?-CGACTGCAGAGCTTGCTACGTTGTAATTCAAAACAAAGGTTTCCTGGACTCCCCGCAGGTCTTGTGAATGGTACCGAGCTCGAATTCCC-3? | Barfod, Anders et al. "In Vitro Selection of RNA Aptamers Directed Against Protein E: A Haemophilus influenzae Adhesin." Mol Biotech, 2014: 1-12 |
119 | Interleukin 17A/F (IL-17A/F) (AptAF42dope1) | Protein | Interleukin-17A/F | 68 | 35.8 nM | Binding buffer-145mM sodium chloride, 5.4 mM potassium chloride, 0.8 mM magnesium chloride, 1.8 mM calcium chloride, 20 mM Tris-HCl (pH 7.6) supplemented with 0.05% Tween20 | 60.29% | 5'-GGGCUAGCUGAUCGUACCAGUAGCGUGGCCUGGGGGGCCUAGUCGUGCGAUACUAACAGCUAACACCC-3' | Adachi, H et al. (2011). Antagonistic rna aptamer specific to a heterodimeric form of human interleukin-17a/f. Biochimie, 93(2011), 1081-1088. doi: 10.1016/j.biochi.2011.04.003 |
120 | Human Matrix Metalloprotease 9 (hMMP-9) | Protein | Human matrix metalloprotease 9 (hMMP-9) | 68 | 8.1 nM | SP buffer: 50 mM Tris HCl, pH 7.4, 50 mM NaCl, 100 mM KCl, 5 mM CaCl2, 1 mM Magnesium Acetate. | 66.18% | 5'-GGUUACCAGCCUUCACUGCUCCCGGACGCGUCUGUAUCCGCUACCCGCCGCACCACGGUCGGUCACAC-3' | 5'-GGUUACCAGCCUUCACUGCUCCCGGACGCGUCUGUAUCCGCUACCCGCCGCACCACGGUCGGUCACAC-3' |