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# | Aptamer Name | Aptamer Target (General) | Aptamer Target (Specific) | Length | Affinity | Buffer | GC Content | Sequence | Reference |
---|---|---|---|---|---|---|---|---|---|
21 | IgE (4.4.12) | Protein | IgE | 78 | 23 nM | Binding buffer: PBS and 1 mM MgCl2 (pH 8.0) | 47.44% | 5'-AGCAGCACAGAGGTCAGATGTGAAACATAGCATATTTACTTATGTCGCCTTGCCGGTTCCTATGCGTGCTACCGTGAA-3’ | Mendonsa, Shaun D. and Bowser, Michael T. "In Vitro Selection of High-Affinity DNA Ligands for Human IgE Using Capillary Electrophoresis." Analytical Chemistry, 76 (2004): 5387-5392. |
22 | TTF1 (A) | Protein | Thyroid Transcription Factor 1 | 78 | 3.36 nM | Ni-NTA magnetic bead (Qiagen) were used with PBS-T (50 mM K2HPO4 pH 7.5, 150 mM NaCl, 0.05% Tween-20) | 50.00% | 5’-GGTATTGAGGGTCGCATCTCAAAAGGGGTGATTGCTTGCACAATGACAGGGTAGGACAGATGGCTCTAACTCTCCTCT-3’ | Murphy et al. "An improved method for the in vitro evolution of aptamers and applications in protein detection and purification." Nucleic Acids Research, 31 (2003): e110. |
23 | Taq DNA polymerase (TQ21) | Protein | Taq DNA polymerase | 78 | 36 pM | Binding Buffer (50 mM KCl, 2.5 mM MgCl2, 10 mM Tris-HCl (pH 8.3)) | 47.44% | 5'-TTCTCGGTTGGTCTCTGGCGGAGCGATCATCTCAGAGCATTCTTAGCGTTTTGTTCTTGTGTATGTTCGCTTTTCCC-3’ | Sumedha and Dang. "Oligonucleotide inhibitors of Taq DNA polymerase facilitate detection of low copy number targets by PCR." Journal of Molecular Biology, 264 (1996): 268-78. |
24 | Lactobacillum acidophilius (hemag1P) | Cells | Lactobacillum acidophilius | 78 | 13 nM | Washed twice with binding buffer: 50 mM Tris-HCl (pH 7.4), 5 mM KCl, 100 mM NaCl, and 1 mM MgCl2 | 47.44% | 5'-AGCAGCACAGAGGTCAGATGTAGCCCTTCAACATAGTAATATCTCTGCATTCTGTGTGCCTATGCGTGCTACCGTGAA-3' | Hamula et al. "Selection of Aptamers against Live Bacterial Cells." Analytical Chemistry, 80(2008): 7812-7819. |
25 | Enterotoxin B (APT SEB1) | Protein | Staphylococcus aureus Enterotoxin B | 78 | N/A nM | Binding buffer: 10 mM phosphate buffer, 2.7 mM KCl, 140 mM NaCl, 0.05% Tween, pH 7.4, | 47.44% | 5'-GGTATTGAGGGTCGCATCCACTGGTCGTTGTTGTCTGTTGTCTGTTATGTTGTTTCGTGATGGCTCTAACTCTCCTCT-3' | DeGrasse, J. (2012). A single-stranded DNA aptamer that selectively binds to Staphylococcus aureus enterotoxin b. PloS One, 7(3): e33410. doi: 10.1371/journal.pone.0033410 |
26 | JH6 | Cells | NB4 AML cell line | 78 | 2.77 nM | 4.5 g/L glucose, 5 mM MgCl2, 0.1 mg/ml yeast tRNA and 1 mg/ml Bovine Serum Albumin (BSA) into Phosphate buffered saline (PBS) | 56.41% | 5?-GACGCTTACTCAGGTGTGACTCGGTACGCCGCAAGACGAGTTGTGTATAAGCCGGCCGAAGGACGCAGATGAAGTCTC-3? | Yang, M. et al. "Developing aptamer probes for acute myelogenous leukemia detection and surface protein biomarker discovery." Journal of Hematology & Oncology 2014, 7:5. |
27 | ACG03 | Cells | gastric cancer cell-line HGC-27 | 78 | 16.49 nM | 4.5 g/l glucose, 5 mM MgCl2,2 mg/ml BSA and 0.2 mg/ml yeast tRNA dissolved in PBS buffer | 60.26% | 5'-ACGCTCGGATGCCACTACAGGGGGGTGGTCCTGAGGGTGGTGTGGTTGGTTTGGTTTCCTCATGGACGTGCTGGTGAC-3' | Zhang, X. et al. "A cell-based single-stranded DNA aptamer specifically targets gastric cancer." The International Journal of Biochemistry & Cell Biology 2014, 46: 1-8. |
28 | AP-1 cJun/cJun Aptamer-19 | Protein | Activator Protein-1 Family cJun/cJun Homodimer | 78 | 0.5 nM | binding buffer (20 mM Tris (pH 7.9), 0.1 mM EDTA, 10% glycerol, 1 mM DTT, 150 mM KCl, 5 mM MgCl2, 0.04% NP-40) | 53.85% | 5’-GGGAGATCACTTACGGCACCGTATAGTCGTACATGAACGAGTGTGAGTGTTAAGCCTTTGGCGACAGGGCTCGGAACC-3’ | Walters RD, McSwiggen DT, Goodrich JA, Kugel JF (2014) Selection and Characterization of a DNA Aptamer That Can Discriminate between cJun/cJun and cJun/cFos. PLoS ONE 9(6): e101015. doi:10.1371/journal.pone.0101015 |
29 | GR-3 | Protein | glucagon receptor (GCGR) | 81 | 52.7±5.1 nM | 5mM MgCl2 and 4.5 g/L glucose in Dulbecco’s Phosphate Bufered Saline (D-PBS, pH=7.4), and 0.1mg/mL yeast tRNA and 1mg/L bovine serum albumin (BSA) to reduce nonspecifc binding. | 46.91% | 5’-ATCCAGAGTGACGCAGCAGATAAGTAGGTATCCGTTTGAAAAACTTTTCTGACCGTCCGACTATGGACACGGTGGCTTAGT-3’ | Wang, Guodong, et al. "Selection and characterization of DNA aptamer against glucagon receptor by cell-SELEX". Nature: Scientific Reports (7): 7179. DOI:10.1038/s41598-017-05840-w |
30 | L-Selectin (LD201) | Protein | L-Selectin | 79 | 1.8 nM | Binding Buffer (20 mM Hepes (pH 7.5), 125 mM NaCl, 1 mM CaCl2, 1 mM MgCl2, 5 mM KCl) plus 0.01% (wt/vol) human serum albumin. | 46.84% | 5'-CTACCTACGATCTGACTAGCCAAGGTAACCAGTACAAGGTGCTAAACGTAATGGCTTCGGCTTACTCTCATGTAGTTCC-3' | Hicke, Brain, et al. "DNA Aptamers Block L-Selectin Function In Vivo Inhibition of Human Lymphocyte Traf?cking in SCID Mic." Journal of Clinical Investigation, 98 (1996): 2688-2692 |