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# | Aptamer Name | Aptamer Target (General) | Aptamer Target (Specific) | Length | Affinity | Buffer | GC Content | Sequence | Reference |
---|---|---|---|---|---|---|---|---|---|
521 | Tumor Endothelial Cells (AraHH001) | Cells | Mouse and Human Tumour Endothelial Cells (mTECs and hTECs) | 40 | 43.8 nM | Selection Buffer: 50 mM Tris-HCl (pH 7.5), 5 mM KCl, 100 mM NaCl, 1 mM MgCl2, 250 mM sucrose and 0.1% sodium azide. | 52.50% | 5' ACGTACCGACTTCGTATGCCAACAGCCCTTTATCCACCTC 3' | Ara N, Hyodo M, Ohga N, Hida, N, Harishima H. (2012) Development of a novel DNA aptamer ligand targeting to primary cultured tumor endothelial cells by a cell-based SELEX method. PLOS one 7: e50174. |
522 | Celiac disease Aptamer (Gli4) | Peptide | 33-mer (immunodominant peptide from alpha2-gliadin) | 40 | 61 nM | 50 mM TRIS-HCl, 0.25 M NaCl, 5mM MgCl2 | 57.50% | Gonzalez, S, et. al. "Aptamer Binding to Celiac Disease-Triggering Hydrophobic Proteins A Sensitive Gluten Detection Approach." 2014. Analytical Chemistry 86: 2733-39. | |
523 | CCFM641-5 | Protein | Unknown Membrane Protien | 40 | 10.69 +/- 0.89 nM | PBS at 37 C for 45 min with slight agitation | 67.50% | 5' TGCGTGAGCGGTAGGCCCCTACGACCCACTGTGGTTGGGC 3' | Hu, Lujun, et al. "Selection, Characterization and Interaction Studies of a DNA Aptamer for the Detection of Bifidobacterium bifidum" International Journal of Molecular Sciences 10.3390(2017): 833. |
524 | Myo40-7-27 | Protein | Myoglobin | 40 | 4.93 nM | 20 mM Hepes, 120 mM NaCl, 5 mM KCl, 1 mM CaCl2, 1mM MgCl2, pH 7.3 | 55.00% | 5' CCCTCCTTTCCTTCGACGTAGATCTGCTGCGTTGTTCCGA 3' | Wang, Q., et al. ??Sensitive point-of-care monitoring of cardiac biomarker myoglobin using aptamer and ubiquitous person glucose meter.? Biosensors and Bioelecgtronics, 64 (2015): 161-164. Wang, Q., et al. ??Screening of DNA Aptamers against Myoglobin Using a Positive and Negative Selection Units Integrated Microfluid Chip and its Biosensing Application.? Analytical Chemistry, 86 (2014): 6572-6579. |
525 | C5s Anti-Antibody | Antibody | Anti-Vesicular Stomatitis Antibody | 40 | n/a nM | 90% High Glucose DMEM, 10% Fetal Bovine Serum. Tested in vivo. | 72.50% | 5' ACTAGGACGCTTGGGAGGGGGGGTGGGGTGTCCGGTCGCG 3' | Muharemagic D, Zamay A, Ghobadloo SM, Evgin L, Savitskaya A, et al. (2014) Aptamer-Facilitated Protection of Oncolytic Virus from Neutralizing Antibodies. Molecular Therapy--Nucleic Acids 3, e167. doi: 10.1038/mtna.2014.19 |
526 | Cellobiose | Small Organic | Cellobiose | 41 | 600 nM | Binding buffer: 20 mM Tris (pH 7.5), 100 mM NaCl, 5 mM MgCl2 | 78.05% | 5' GCGGGGTTGGGCGGGTGGGTTCGCTGGGCAGGGGGCGAGTG 3' | Yang, Q., et al. "DNA ligands that bind tightly and selectively to cellobiose." PNAS, 95 (1998): 5462-5467. |
527 | Daunomycin (10.10v) | Small Organic | Daunomycin | 41 | 272 nM | Binding Buffer ((20 mM TrisHCl [pH 7.4], 140 mM NaCl, 5 mM KCl, 1 mM MgCl2, 1 mM CaCl2, and 0.05% [v/v] Tween 20) | 58.54% | 5' ACCATCTGTGTAAGGGGTAAGGGGTGGGGGTGGGTACGTCT 3' | Wochner, et al. "A DNA aptamer with high affinity and specificity for therapeutic anthracyclines." Analytical Biochemistry, 373(2008): 34-42. |
528 | HIV-1 Reverse Transcriptase (R1T) | Protein | HIV-1 RT | 41 | 1.1 nM | 50 mM Tris-HCl, pH 8.0, 80 mM KCl, 6 mM MgCl2, and 1 mM DTT. | 63.41% | 5' CGCCTGATTAGCGATACTCAGCGTTGGGTGGGTGGGTGGG 3' | (A) D Michalowski et al. Novel bimodular DNA aptamers with guanosine quadruplexes inhibit phylogenetically diverse HIV-1 reverse transcriptases. Nucleic Acid Res. 36(2008): 7124-7135. (B) Y-T Lai and J DeStefano. DNA aptamers to human immunodeficiency virus reverse transcriptase selected by a primer-free SELEX method: characterization and comparison with other aptamers. Nucleic Acid Therapeutics 22(2012): 162-176 |
529 | CCRF-CEM (sgc8c) | Cells | Acute lymphoblastic leukemia (CCRF-CEM) | 41 | 0.78 nM | Binding buffer: 0.1mg/ml yeast tRNA and 1 mg/ml BSA into wash buffer (4.5g/L glucose, 5 mM MgCl2 in Dulbecco's PBS with CaCl2 and MgCl2) | 51.22% | 5' ATCTAACTGCTGCGCCGCCGGGAAAATACTGTACGGTTAGA 3' | (A)Shangguan et al. "Optimization and Modifications of Aptamers Selected from Live Cancer Cell Lines." Chem. Biochem., 8, (2007): 603-6. (B) Y-F Huang et al. Molecular assembly of an aptamer-drug conjugate for targeted drug delivery to tumor cells. Chembiochem. 10(2009):862-868 |
530 | Anti Lung Carcinoma ( EJ4) | Cells | Lung Adenocarcinoma (H23) | 41 | 60 nM | 0.45% w/v glucose 5 mM MgCl2 in PBS 1 mg/mL tRNA 1 mg/mL BSA incubate with cells for 30 minutes | 53.66% | 5' GAAGACGAGCGGCGAGTGTTATTACGCTTGGAAACAACCCC 3' | Jimenez et al. Generation of Lung Adenocarcinoma DNA Aptamers for Cancer Studies (PLOSone) |