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# | Aptamer Name | Aptamer Target (General) | Aptamer Target (Specific) | Length | Affinity | Buffer | GC Content | Sequence | Reference |
---|---|---|---|---|---|---|---|---|---|
151 | 14-16 | Protein | Mouse P68 RNA Helicase (Ddx5) | 80 | 30.8 nM | For selection: 5 nmol of aptamer pool in 200 µl of PBS, injected systemically and allowed to circulate for 20 minutes For binding assay: 10 mM Tris-HCl (pH 7.0), 150 mM NaCl, 10% (v/v) glycerol, 2.5 µg/ml tRNA. 10 minute incubation at 37°C For affinity purification: 20 mM HEPES (pH 7.4), 150 mM NaCl, 2 mM CaCl2, 0.1% BSA, 0.1 µM tRNA at 4°C for 2 hours | 65.00% | 5'-GGGAGGACGAUGCGGCAGUGCCCAACCGGAACAACAACCACCGGCGGCUCCUGCUCAGACGACUCGCUGAGGAUCCGAGA-3' | Mi et al. ??In vivo selection of tumor-targeting RNA motifs?. Nature Chemical Biology 1(2010): 22-24. DOI: 10.1038/NCHEMBIO.277 |
152 | Integrin ?V subunit (aV-1) | Protein | Integrin aV subunit | 81 | 2.7 nM | Binding Buffer: PBS supplemented with 0.05% Tween-20 and 0.1% BSA. | 58.02% | 5'-GGGAGGACGAUGCGGCACACAUUCCCGUCCUCGAUACGUCUAGGCUUAGUGCCACUUGCUUAAUCCAGACGACUCGCCCGA-3' | Gong, Q. et al,(2012). Selection strategy to generate aptamer pairs that bind to distinct sites on protein targets. Analytical Chemistry, 2012(84), 5365-5371. |
153 | Integrin ß3 subunit (ß3-1) | Protein | Integrin ß3 subunit | 81 | 6.5 nM | Binding Buffer: PBS supplemented with 0.05% Tween-20 and 0.1% BSA. | 59.26% | 5'-GGGAGGACGAUGCGGCCCAGAUUACUGUGGAGUGGUUGUCUGCGAAUCCUUCGUCCACCCAAUAGCAGACGACUCGCCCGA-3 | Gong, Q. et al,(2012). Selection strategy to generate aptamer pairs that bind to distinct sites on protein targets. Analytical Chemistry, 2012(84), 5365-5371. |
154 | CD4 (aptamer 12) | Protein | CD4 protein found on CD4+ T-Cells | 86 | 0.5 nM | Binding Buffer: PBS containing 1 mM MgCl2 | 51.16% | 5'-GGGAGACAAGAAUAAACGCUCAAGUGACGUCCUGAUCGAUUGUGCAUUCGGUGUGACGAUCUUUCGACAGGAGGCUCACAACAGGC-3' | K A Davis et al. "Staining of cell surface human CD4 with 2'-F-pyrimidine-containing RNA aptamers for flow cytometry." Nucleic Acids Res 26(1998):3915-3924. |
155 | CD4 (Aptamer 7) | Protein | CD4 | 87 | .5 nM | Elution Buffer: (50 mM sodium phosphate, 150 mM NaCl, 2 M urea and 0.1% NaN3 (pH 7.2)) | 48.28% | 5'-GGGAGACAAGAAUAAACGCUCAAUGUGUCGUCCUGGUACGAUUUUGGUAUAUAACCGUGGCUUUUCGACAGGAGGCUCACAACAGGC-3' | Davis, K., et al. "Staining of cell surface human CD4 with 2'-F-pyrimidine-containing RNA aptamers for flow cytometry." Nucleic Acids Research, 26(1998): 3915-3924. |
156 | Rous Sarcoma Virus (A) | Cells | Rous Sarcoma Virus | 87 | 20 nM | Binding buffer: 2.5 mM MgCl2, 100 mM NaCl, 20 mM Tris-HCl (pH 7.4) | 55.17% | 5'-GGGAGCUCAGAAUAAACGCUCAAGGGUAGGGAUCGUUACCCCGACAUUUUAAUGGGCCGAUGUUUCGACAUGAGGCCCGGAUCCGGC-3' | Pan et al. Isolation of virus-neutralizing RNAs from a large pool of random sequences." PNAS, 92(1995): 11509-11513. |
157 | RIG-I (CL9) | Protein | RIG-I | 92 | 37.2 nM | 1X PBS with 1 mM MgCl2 | 50.00% | 5'-GGGAGAGCGGAAGCGUGCUGGGCCACCAUCCGUAACUAGCUAAUACUUGUUAUCUUUUUAUUUUCAUAACCCAGAGGUCGAUGGAUCCCCCC-3' | Hwang et al. "5'-Triphosphate-RNA-independent activation of RIG-1 via RNA aptamer with enhanced antiviral activity." Nucleic Acids Research 40(2011): 2724 - 2733 |
158 | Anti-EGFR (E07) | Protein | hEGFR and mEGFR | 93 | 2.4 nM | 1X DPBS, 5mM MgCl2, pH 7.1-7.5 | 52.69% | 5'-GGCGCUCCGACCUUAGUCUCUGUGCCGCUAUAAUGCACGGAUUUAAUCGCCGUAGAAAAGCAUGUCAAAGCCGGAACCGUGUAGCACAGCAGA-3' | N. Li et al. "Inhibition of Cell Proliferation by an Anti-EGFR Aptamer." PLoS One 6(2011): e20299. |
159 | Anti-EGFR (E03) | Protein | mEGFR and hEGFR | 93 | 29 nM | 1X DPBS, 5mM MgCl2, pH 7.1-7.5 | 51.61% | 5'-GGCGCUCCGACCUUAGUCUCUGUGCUAGUAUAUCGCACGGAUUUAAUCGCCGUAGAAAAGCAUGUCAAAGCCGGAACCGUGUAGCACAGCAGA-3' | N. Li et al. "Inhibition of Cell Proliferation by an Anti-EGFR Aptamer." PLoS One 6(2011): e20299. |
160 | 4-1BB ligand (M12-23) | Protein | 4-1BB ligand on CD8+ T Cells | 96 | 40 nM | Low Salt Binding Buffer: 20 mM Hepes, pH 7.4; 50 mM NaCl; 2 mM CaCl2 ;0.01% BSA. | 58.33% | 5'-GGGAGAGAGGAAGAGGGAUGGGCGACCGAACGUGCCCUUCAAAGCCGUUCACUAACCAGUGGCAUAACCCAGAGGUCGAUAGUACUGGAUCCCCCC-3' | J. O. McNamara II et al.. Multivalent 4-1BB binding aptamers costimulate CD8+ T cells and inhibit tumor growth in mice. J. Clin. Invest. 118(2008):376-386. |