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# | Aptamer Name | Aptamer Target (General) | Aptamer Target (Specific) | Length | Affinity | Buffer | GC Content | Sequence | Reference |
---|---|---|---|---|---|---|---|---|---|
431 | Aspartame | Protein | Aspartame | 99 | 5 mM | Selection Buffer (150 mM NaCl, 10 mM MgCl2, 1 mM EDTA, 10 mM Sodium Phosphate, 90 mM HEPES (pH 7.1)) Assay Buffer (180mM HEPES (pH 7.0±8.0), 300 mM NaCl, 20 or 50 mM MgCl2, 2 mM EDTA, 20 mM Na phosphate), r.t. | 51.52% | 5' GGAUGUCCAGUCGCUUGCAAUGCCCUUUUAGACCCUGAUGAGCGGUGCUAGUUAGUUGCAGUUUCGGUUGUUACGCGAAACGGUGAAAGCCGUAGGUCU 3' | Ferguson et al. "A novel strategy for selection of allosteric ribozymes yields RiboReporter TM sensors for caffeine and aspartame." Nucleic Acids Research, 32(2004): 1756-1766. |
432 | RNA Tobramycin Molecular Beacon (BA 14-2) | Small Organic | Tobramycin | 104 | 16 µM | Binding buffer: 50 mM Tris (pH 7.4), 500 mM NaCl | 48.08% | 5' GGAAUGGAUCCACAUCUACGAAGGCUUUGAAGGUGAGACCGUGCAAAUGAGGAUGGUGUGGAUGAUUAGGGUUGUCGGUUUUCACUGCAGACUUGACGAAGCUU 3' | Morse, Daniel. "Direct selection of RNA beacon aptamers." Biochemical and Biophysical Research Communications, 359 (2007): 94ƒ??101. |
433 | L-tryptophan(Trp 70-727) | Protein | L-tryptophan | 104 | 15 nM | Selection buffer: 50 mM HEPES (pH 7.0), 250 mM NaCl, 5 mM MgCl2, 5 mM CaCl2, 5 mM glycine | 59.62% | 5' GGGAUCCUAAGCUCUAUCGGCUGGACGACGGGGACGCCACUGGACUAGGUAAGCCAGGACCGUACGUCGGGAGCCGUCAGAAUAAAAGCGGCCUAGCGAUCGAU 3' | Majerfeld and Yarus. "A diminutive and specific RNA binding site for L-tryptophan." Nucleic Acids Research, 33(2005): 5482-5493. |
434 | C-Reactive Protein (CRP1-1) | Protein | C-Reactive Protein (CRP) | 104 | 2.25 nM | Binding Buffer: 20 mM Tris-HCl (pH 7.5), 140 mM NaCl, 2 mM CaCl2and 1 mM MgCl2. | 53.85% | 5' GGGCGAAUUCGGGACUUCGAUCCGUAGUACCCACCAGGCAUACACCAGCACGCGGAGCCAAGGAAAAAUAGUAAACUAGCACUCAGUGCUCGUAUGCGGAAGCU 3' | N Orito, Y Kikuchi, et al. High-affinity RNA aptamers to C-reactive protein (CRP): newly developed pre-elution methods for aptamer selection. J. Phys. Conf. Ser. 352(2012): 012042. doi:10.1088/1742-6596/352/1/012042. |
435 | ATP C32 | Small Organic | ATP | 104 | 27 µM | (50 mM Tris–HCl, pH 7.5, 150 mM NaCl, 5 mM MgCl2) + 1 mg/ml tRNA and 0.1 mg/ml BSA | 49.04% | Weill L., Louis D., and Sargueil B., 2004.Selection and Evolution of NTP-Specific Aptamers. Nucleic Acids Research, 2004 Vol. 32 No. 17, 5045-5058 | |
436 | Interleukin-6 receptor (AIR-3) | Protein | Soluable interleukin-6 receptor (sIL-6R) | 106 | 19.7 nM | Selection Buffer (used for Filter Retention Assay): 137 mM NaCl, 2.7 mM KCl, 6.5 mM Na2HPO4, and 3 mM MgCl2 at PH 7.5. | 45.28% | 5' GGAAGAAAGAGGUCUGAGACAUUCUCUUAUAGGGGAGGCUGUGGUGAGGGAAUAUUAAGAGAAUUAACGGUCUAGUUCACCUCGACUUCUGGAGUUGACGUUGCUU 3' | Meyer C, U Hahn, et al. (2012) Interleukin-6 Receptor specific RNA aptamers for cargo delivery into target cells. RNA Biol |
437 | ATP C27 | Small Organic | ATP | 106 | 21 µM | (50 mM Tris–HCl, pH 7.5, 150 mM NaCl, 5 mM MgCl2) + 1 mg/ml tRNA and 0.1 mg/ml BSA | 51.89% | Weill L., Louis D., and Sargueil B., 2004.Selection and Evolution of NTP-Specific Aptamers. Nucleic Acids Research, 2004 Vol. 32 No. 17, 5045-5058 | |
438 | Amyloid Peptide BetaA4(1– 40) (B55) | Peptide | Amyloid Peptide BetaA4(1– 40) | 107 | 29 nM | Binding Buffer (10 mM Tris–HCl (pH 7.5), 150 mM NaCl, 5 mM MgCl2, 1 mM EDTA). Incubated at room temperature. | 54.21% | 5' GGGAAUUCGAGCUCGGUACCUUUACCGUAAGGCCUGUCUUCGUUUGACAGCGGCUUGUUGACCCUCACACUUUGUACCUGCUGCCAACUGCAGGCAUGCAAGCUUGG 3' | Ylera, Francisco, et al. "Selection of RNA Aptamers to the Alzheimer's Disease Amyloid Peptide." Biochemical and Biophysical Research Communities, 290 (2002): 1583-1588. |
439 | SARS Coronavirus NTPase/Helicase (ES15-1) | Protein | SARS Coronavirus NTPase/Helicase | 107 | 1.2 nM | Binding Buffer (30 mM Tris–HCl (pH 7.5), 150 mM NaCl, 1.5 mM MgCl2 , 2 mM dithiothreitol (DTT) and 1% (w/v) BSA) Termination Buffer (0.2 M EDTA, 0.2 M NaCl, and 20 mM HEPES (pH 7.4)) Buffer A (25 mM Tris–HCl (pH 7.5), and 0.3 mM NaCl) | 46.73% | 5' GAUAAUACGACUCACUAUAGGGUUCACUGCAGACUUGACGAAGCUUGCAGAAAAGGGGGAAGAAGAGGGUGAUUCAGGCGAGAGAAUGGAUCCACAUCUACGAAUUC 3' | Jang, K., et al. "Isolation of inhibitory RNA aptamers against severe acute respiratory syndrome (SARS) coronavirus NTPase/Helicase." Biochemical and Biophysical Research Communications, 366(2008): 738-744. |
440 | Tobramycin (J6) | Small Organic | Tobramycin | 109 | 2 nM | Selection Buffer: 140 mM NaCl, 5 mM KCl, 1 mM CaCl2, 1mM MgCl2, and 20 mM Tris Acetate (pH 7.4) | 51.38% | 5' GGGAGAAUUCCGACCAGAAGCUUAGUAUAGCGAGGUUUAGCUACACUCGUGCUGAUCGUUUGGUACGGGACCUGCGUGUAGCCCAUAUGUGCGUCUACAUGGAUCCUCA 3' | Wang, Yong, et al. "Specific binding of aminoglycoside antibiotics to RNA." Chemistry & Biology 2 (1995): 281-290 |